Archive for the 'bio' Category

Saturday, January 23rd, 2010

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In an earlier randform post, the distribution of surplusses was discussed, among others it was proposed to simulate a different way of distributing surplusses in a game-like environment. There were some comments to this:
Sabrina Says:” why don’t you make a business model out of that game prototype?”
Victor Says:
“if you have these dangerous ideas to abolish banks or let them go bankrupt, this is communism!
And
“did you fit in all your parameters?!”

Here a reply to the comment by Victor “if you have these dangerous ideas to abolish banks or let them go bankrupt, this is communism !” :

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The tragedies of marine towns

Friday, December 18th, 2009

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On monday a study by the Convention on Biological Diversity in collaboration with the UNEP World Conservation Monitoring Centre was released (->press release). The study with the title “Scientific Synthesis of the Impacts of Ocean Acidification on Marine Biodiversity” is a survey on the current results in the investigation of ocean acidity. It is thus a follow-up study to studies initiated e.g. by the global network of science academies (see IAP statement on ocean acidification ) or like the ones which led to the Monaco Declaration.

A main message of these studies and statements is that Carbondioxide i.e CO2 (a major greenhouse gas) has increasingly been taken up by the worlds oceans and thus reduced the effects caused by an increased CO2 level in the athmosphere like e.g. the greenhouse effect. This may on the first sight sound good to climate sceptics since it means that there are processes which act naturally against higher CO2 levels. Unfortunately there are now plenty of measurements which indicate that the uptake of CO2 has been slowing down in the last years, i.e. that it seems that a kind of saturation has been partially/will be reached soon. Due to this the
accumulation of CO2 in the atmosphere may accelerate rather soon.

A second main message/problem with this uptake of CO2 is ocean acidification. If CO2 reacts with water this gives carbonic acid , which dissolves mostly to HCO3- and hydrogen ions H+. Thus after CO2 has been taken up by the ocean waters it will give to a smaller amount carbonic acid H2CO3 and carbonate ions CO3^2- and for the most part bicarbonite ions HCO3-. The hydrogen ions decrease the PH level – (you may sometimes find information of PH levels on your liquid soap) that is – the PH gives an indication of the concentration of hydrogen ions H+ via the concentration of Hydronium and it is thus a measure of the acidity or basicity of a solution.

Furthermore the carbonate ions CO3^2- form together with H+ again bicarbonate HCO3-. A higher concentration of H+ (“the acidity”) thus decreases the availablity of carbonate. But carbonate is necessary for producing calcium carbonate (CaCO3) which is essential for shell formation in marines organisms such as corals, shellfish and marine plankton. In other words the increasing acidification of the oceans is harmful to a lot of marine creatures. Since this process is very fast and the fast increasing acidification is clearly measurable this will lead to a rapid change in the composition of the oceans with more or less forseeable consequences. In particular it is very likely that this will have an impact on fish consumption.

update addition Jan, 28. 2017:
Here is more on how the composition of oceans may change, which indicates that at least some of the marine creatures which build shells might still keep their ability to create shells despite increasing acidification. There is a new study:
Proton pumping accompanies calcification in foraminifera (via wattsupwiththat.com) which indicates that amongst others a species called perforate foraminifera Ammonia sp. seems to be able to do so and the amount of perforate foraminifera is not too small:

“A large portion of open ocean calcium carbonate production, between 20 and 50%, derives from perforate foraminifera. Despite its clear importance for the global carbon cycle, the physiological processes responsible for calcification in foraminifera are poorly understood. The key to understanding foraminiferal calcification centres on the relation between carbon speciation in seawater and preferential uptake of these chemical species (CO2, bicarbonate and/or carbonate ions)”

The mechanism is roughly the following. Foraminifera are massively pumping protons (i.e. H+) into their local environment and so make the surrounding waters even more acidic (i.e. lower PH values). This however means that on average less CO2 is dissolved in water, i.e. some of the protons will recombine with HCO3- to H2O and CO2:


Karbonatsystem_Meerwasser_de.svg by Wikipedia User:BeAr, public domain

It seems an enzym called V-type H+ ATPase is responsible for the proton pumping.
While the protons are pushed out, there is an “inside” location in the forminifer (the socalled site of calcification (SOC)) which is less acidic and so shell formation can take place. For this the CO2 is “sucked into the foraminifer”, i.e.: “As CO2 diffuses easily across cell membranes compared to HCO3−, the large pCO2 gradient results in a flux of carbon dioxide into the foraminifer.” And so shell formation can take place at the SOC via the in the blogpost described process.

How acidic is the corresponding pumped microenvironment? The researchers write:

The foreseen reduction in pH (from 8.1 today to ∼7.8 at the end of the twenty-first century36) by increased oceanic CO2 uptake is relatively small compared with the pH decrease in the foraminiferal microenvironment (down to 6.9 in Fig. 1) during calcification.

and so

Hence, a relatively moderate decrease in pH may not impair foraminiferal calcification, especially as DIC increases at the same time. Ocean acidification may still affect calcification indirectly (for example, through altered metabolism).

where DIC is “dissolved inorganic carbon” i.e. all those bi,di, etc. carbonates.

Hence in the abstract they conclude:

…total dissolved CO2 may not reduce calcification, thereby potentially maintaining the current global marine carbonate production.

which I find a bit too optimistic in view that only between 20 and 50% calcium carbonate production derives from perforate foraminifera and not much is known about the other species apart from the fact that some seem definitely not able to maintain shell formation:

Results from culturing experiments mimicking ocean acidification showed contrasting responses of calcification: calcification was reduced in some species, whereas others were not affected.

Moreover the proton pumping mechanism may not work if acidification levels lower beyond 6.9.

Optimizing oil and gas

Monday, December 7th, 2009

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“Lumbaziger Batz mit Bazillenrillen” artwork: Bellum Macchina

update 9.12.09: I just appended the above illustration to belows post and the post
before
in order to draw more attention to it.

In an article “Strahlender Abfall von Öl und Gas” by Juergen Doeschner of the public TV station WDR it was reported that the Oil and Gas industry kept quiet about the problem of nuclear waste occurring in oil and gas extraction. Here radioactive waste is due to naturally occurring radioactive materials which are surfaced from subsurface formations.

citation from the article: “Strahlender Abfall von Öl und Gas”

“Der Branchenverband begründet dieses Vorgehen mit der vermeintlichen Ungefährlichkeit der kontaminierten Rückstände. “Wir haben es hier mit natürlicher Radioaktivität in einem relativ geringen aktiven Bereich zu tun, der im Bereich der natürlichen Radioaktivität auch unserer Umgebung liegt”, sagt Verbandssprecher Pick.
[Hartmut Pick, Sprecher des Wirtschaftsverbandes Erdöl- und Erdgasgewinnung (WEG)].

Diese Aussage ist falsch und widerspricht den eigenen Angaben des Verbandes. Denn danach ist die durchschnittliche Belastung der radioaktiven Öl- und Gasabfälle fast 700 mal höher als die durchschnittliche Belastung des Erdbodens. Dem WDR liegt ein Papier der Firma Exxon vor, wonach die mittlere Belastung der Abfälle sogar 3000 mal höher ist.”

translation without guarantee: The business association justifies this approach with the putative innocuity of the contaminated residues. “We are dealing here with naturally occuring radioactivity which is in the range of naturally radioactivity as it occurs in our environment.”, says spokesman of the association Pick.
[Hartmut Pick, spokesman of the business association/Wirtschaftverband Erdöl- und Erdgasgewinnung (WEG)]

This statement is wrong and it is in contradiction to the information given by the association, according to the which the average contamination of radioactive waste from Oil and Gas is about 700 times bigger than the average contamination of the soil. WDR has a document from the company Exxon, according to which the average contamination is even 3000 times bigger.

For comparision a citation from world-nuclear.org of today:

In the oil and gas industry radium-226 and lead-210 are deposited as scale in pipes and equipment. If the scale has an activity of 30,000 Bq/kg it is ‘contaminated’ (Victorian regulations). This means that for Ra-226 scale (decay series of 9 progeny) the level of Ra-226 itself is 3300 Bq/kg. For Pb-210 scale (decay series of 3) the level is 10,000 Bq/kg. These figures refer to the scale, not the overall mass of pipes or other material (cf. Recycling, below). Published data (quoted in Cooper 2003) show radionuclide concentrations in scales up to 300,000 Bq/kg for Pb-210, 250,000 Bq/kg for Ra-226 and 100,000 Bq/kg for Ra-228. In Cooper 2005, the latter two maxima are 100,000 and 40,000 respectively.
->Cooper M.B. 2003, NORM in Australian Industries, report for Radiation Health & Safety Advisory Council.
->Cooper M.B. 2005, NORM in Australian Industries – Review of current inventories and future generation, report for Radiation Health & Safety Advisory Council of ARPANSA.

I understand (?) the citation from nuclear.org as that the australian threshold for contamination with Ra-226 is 3300 Bq/kg, the found value however 250,000 Bq/kg in the first cited report or 100,000 Bq/kg in the second cited report. That would mean that the values for radium 226 (which has a half-life of 1602 years) according to these reports in hard scale are roughly 75 times or roughly 30 times higher than they should be according to australian standards.

So alone by looking at the contamination with radium it seems there is a rather expensive nuclear waste problem in the oil and gas industry. Thus as the Strahlender Abfall von Öl und Gas”-article by Juergen Doeschner also reports the radioactivity threat from this kind of waste is in Kasachstan meanwhile bigger than the threat which stems from earlier nuclear bomb tests, furthermore in the US contaminated pipes where donated to preschools and Britain is spilling its corresponding problematic waste into the north sea.

about inspection optimization in nuclear energy

Friday, December 4th, 2009

In an earlier randform post about scaling factors in nuclear power generation I tried to explain what is implied if nuclear power generation is going to be increased. Among others I was talking about the risk of a nuclear accident which is going to rise by scaling things up. An important quantity in risk assessment in nuclear power generation is the core damage frequency. The corresponding Wikipedia article links to a ressource by the Electric Power Research Institute by which the probability of a damage of the nuclear core was in 2005 (i.e. the more dangerous type of fast breeder reactors, which will dominate in the future is included in this average only to a small amount) at 2*10^(-5)=0.00002 per reactor and year (there seem to be ressources which indicate that this frequency may be higher though).

This means that is if one has approx. 500 reactors worldwide the likelihood of a core damage somewhere in the world was in 2005 one damage in 100 years, if we take again a factor ten as in the randform post about scaling factors in nuclear power generation then this would rise to one core damage every 10 years. If we include an higher risk for fast breeders (which is a technology, which hasnt been tested exhaustively) then this likelihood rises again. Core damages are quite crucial because they can lead to a nuclear meltdown.

Other risks are therefore often calculated in relation to the core damage frequency. While answering to a comment about Leukemia I stumbled upon the “Studies on Applying Risk Informed In-Service Inspection for Indian Nuclear Power Plant and Heavy Water Plant” by G. Vinod from the reactor safety division at the indian Babha Atomic Research Centre in which probabilistic safety assessment techniques for indian nuclear power plants which among others are using the core damage frequency are discussed in particular with regard to optimizing inspection. A citation from the article

An optimum plan should be devised subjected to constraints such as risk to plant, cost of inspection and radiation exposure to workers, if the component is in radioactive area.

Its not clear to me to what extent inspection optimization may lead to an increase of the core damage frequency.

About the “Concept for an integrated energy-research program for Germany”

Friday, September 18th, 2009

There had been some uproar in mediascape-Germany about a study with the title “Konzept für ein integriertes Energieforschungsprogramm für Deutschland” (“Concept for an integrated energy-research program for Germany”). According to Financial times Deutschland” (FTD) the study was commissioned by the Federal Ministry of Education and Research however the study had been withheld from the public for 3 months.

The study is now -after the uproar- openly available. The reasons for the ministries policy of secrecy gave of course way to speculations in the press. So among others the study suggests that besides studying halite rock formations as a suitable geological formation for a final nuclear dump site, like the one in Gorleben it is meanwhile scientifically established that also Claystone formations may provide an alternative for a final nuclear waste repository. Since most of these rock formations can (according to FTD) be found in the current ministers “electoral homeland” Baden-Würtemberg and since the german elections will take place in about one and a half weeks it is understandable that the press identified this fact as a possible reason for the withheld (i.e. nobody wants a nuclear dump site in ones own backyard).

Another possible reason why the study was withheld was seen in the fact that the study suggests that an enforced research in nuclear power generation – and in particular in new nuclear fission technology could be a politically desired pathway in energy research (note the subtlety: the study does not suggest to pursue enforced research in nuclear energy, but states that enforced research in nuclear energy, in particular in new reactor types, may be a political request). This is in contrast to the current official political line of the minister and chancelor Angela Merkels party the CDU. Their official line (towards voters) is basically that power genration via nuclear fission should play NO role in Germanys future energy generation.

I have unfortunately currently not the time to study the study in full detail but nevertheless – here are some remarks to the study:

The study was made under the auspices of two german science/humanities academies, namely the National academy of science and the Berlin-Brandenburg Academy of Sciences and Humanities a third collaborator was the German Academy of Science and Engineering (Acatech), which claims itself to be a non profit agency, which represents the interests of German sciences and technology. Acatech has a strong connection to business, last but not least via funding. This has advantages and disadvantages.

Responsible for the text of the study are Prof. Dr. Frank Behrendt (Institut für Energietechnik, TU Berlin), Prof. Dr. Ortwin Renn (Abteilung für Technik – und Umweltsoziologie, Universität Stuttgart), Prof. Dr. Ferdi Schüth (Max- Planck-Institut für Kohlenforschung, Mülheim/Ruhr) and Prof. Dr. Eberhard Umbach (Forschungszentrum Karlsruhe), however the study encompasses contributions from numerous individuals (p.58 of the study) which are researchers from universities but also representatives of companies such as Siemens. As a remark: the company Siemens seems to intent to terminate its engagement within the french nuclear company AREVA, however according to this article it may replace its french engagement with a cooperation with the russian nuclear company Atomenergoprom. This should put the neutrality at least of parts of the study -namely those concerning nuclear power generation- under scrutiny.

A main argument of the study is that the challenges of Germany’s future power generation can only be dealt with in a – what the authors call- “systemic perspective” that is with an approach which integrates not only the scientific and technological demands of power generation but also the juridicial, sociological etc. aspects which are connected with it. The arguments are similar to the IPCC conclusions. For accomplishing this integration approach the study suggests among others to establish energy research clusters (similar to the US american Energy Frontier Research Center (EFRC), public-private partnerships like the british Energy Technologies Institute (ETI) and one central german energy research center which bundles the research activity and which serves as an outside representative for Germany’s energy research. The tasks and concrete realizations of such a center havent been yet not very much specified, however integrating and coordinating energy research is in my opinion definitely sound.

Moreover the study collects “no-regret” research options, like research in insulation improvements, energy efficiency, research in how necessary behavioural changes may be adressed appropriately, in how international agreements could be furthered etc. At this place I would have liked to see a stronger discussion of the problems related to patents/intellectual property rights obstructing technological development and international agreement processes.

Within the technological component the study identifies three main research sectors according to which politics can choose to put emphasis on. These are: regenerative energies, carbon based energies and finally -although as pointed out above there is currently no official political backing for this- nuclear energy. The technological aspects of each sector are introduced in the study in a socalled module.

I’d like to concentrate a bit on the nuclear energy module, since the text of the nuclear energy module is mildly put indeed controversial.

As already indicated the aspect that nuclear fission research may be pursued only with the goal of securing its safe pullback (which is the official political line!) is just a little side remark in the text.

In particular it is argued that in order to keep a fall back option on nuclear (fission) energy, Germany could feel strongly advised to support research in new fission technology and thus could feel the need to support the development of fast breeders and in particular in 4’th generation reactorsystems:

Deutschland kann sich aufgrund seiner Expertise hier an vorderster Stelle beteiligen, um unter anderem höchste Sicherheitsstandards zu etablieren.

(translation without guarantee: Germany may – based on its expertise – take part in this in the front row in order to establish among others highest security standards.)

The option that a fallback option on nuclear fission technology could also exist without a german research effort or accomplished with just a small german contribution like within an international noncommercially oriented community research project (my favoured option) is not mentioned.

The study mentions the necessity to keep a fallback option on nuclear fission due to the reason that climate change could have more dramatic consequences than expected, this was also annotated in an earlier randform post.

However the study suggests that such a fallback option may also be justified by the strong pressure which may be due to an international renaissance of nuclear fission technology and which may be due to raising energy needs (p.15) especially in regard to financial feasibility (p.12).

Yet the most problematic part of the nuclear module was the sentence:

“Außerdem müssen bei einer Wiederaufnahme der Forschungsarbeiten zu neuen Reaktoren bereits frühzeitig Ansätze entwickelt werden, mittels derer die Technologie gegebenenfalls umgesetzt werden könnte, ohne Widerständen zu begegnen oder – für den Fall, das dies nicht möglich ist – mit diesen Widerständen konstruktiv umzugehen.”

(translation without guarantee: Furthermore in case of a resumption of the research efforts concerning new reactor types one has to develop at an early stage approaches with which the technology could be realized without encountering resistance or – if this is not possible – develop approaches on how to deal with this resistances in a constructive way.)

I hope this sentence was a very unfortunate phrasing accident and that the authors do not really mean what they write here.

On the socalled Greiser-study

Sunday, September 6th, 2009

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According to Spiegel a new study by Eberhard Greiser on the correlation between living in the vicinity of a nuclear power plant and children Leukemia had been brought forward.

randform reported recently in a blog post about an earlier study (the socalled KIKK-study, see also: Kaatsch P, Spix C, Schulze-Rath R, Schmiedel S, Blettner M. Leukemia in young children living in the vicinity of German nuclear power plants. Int J Cancer 2008; 122 (4): 721-726) in which a correlation between living next to a german nuclear power plant and childhood leukemia was asserted. This very comprehensive study gave way to many discussions about nuclear power, however although the study established a correlation between children getting sick of Leukemia and living next to a nuclear power plant the KIKK-study could not identify a cause for that correlation. May be this was the reason why no political measures, like sending out warnings for those living close to a nuclear power plant were enforced. In particular it was argued that the measured radiation in the vicinity of a nuclear power plant could – due to its low value – not be accounted for an increased risk of developping Leukemia. However as pointed out earlier the KIKK-study doesn’t rule out this possibility either and there may be other risk factors, which could (and should) in principle be investigated.

The study by Eberhard Greiser (shortly called Greiser-study) is interesting. It is however of a different kind than the KIKK-study. First of all the KIKK study had been commissioned by the german Ministry of Environment and the Federal Office for Radiation Protection. The Greiser-Study had been commisioned by the german green party (which is against nuclear power generation). This shall put the neutrality of the Greiser-study under strong scrutiny. The KIKK study had been undertaken by the Institut for Medical Biometry, Epidemiology and Informatics at the University of Mainz and the German Childhood Cancer Registry (Kinderkrebsregister), the study by Greiser had been performed by him as a consultant at a consultant company called epi.consult, a company of which I couldn’t find a website. Nevertheless Eberhard Greiser seems to be a distinguished scholar (Biomedexperts link1,link2?), in particular he is mentioned as the founder of the Bremen Institute for Prevention Research and Social Medicine, given his publications on Biomedexperts and e.g. this book he seems to be an expert for epidemiological investigations. So in short – the academic reputation of this person could in principle reinforce some trust in the neutrality of the study.

Greisers study investigates given data in journal articles and cancer registries (in particular he includes the KIKK study). So Eberhard Greiser used more or less open accessible data (see also here in this randform post about cancer in Marine county) in order to perform a statistical analysis. He analyzed data of 80 nuclear power plants in the five countries: Germany, France, Great Britain, USA and Canada.

Main result of Greiser-study:
The Greiser-study displayed a statistically increased risk for children (up to age 24) to develop Leukemia due to living next to a nuclear power plant. The risk was increased by 13% to 24% with respect to the respective national average risk of developping Leukemia.

E. Greiser lists all his data sources, in particular he lists which source was used for investigating each of the 80 nuclear power plants. The data from each facility is then weighted in a socalled meta-analysis (a method which seems to be described in DerSimonean R., Laird N. Meta-analysis in clinical trials, 1986;7:177-188 and Greenland S. Quantitative Methods in the review of epidemiologic literature, Epidemiol Rev 1987; 9:1-30). This method was used in order to gain a statistically relevant evidence for the international comparision.

In order to understand the implications of the main result Eberhard Greiser mentions that passive smoking increases the risk of lung cancer by 13% to 19%.

Concluding it can be said that there is plenty of data about cancer occurrences available, especially on an international level. The Greiser-study displays this already at the example of only 5 countries. This data however should be analysed in a more neutral (and international) setting than in the Greiser-study in order to obtain a neutral matter-of-fact scientifically sound analysis of the health risks of nuclear energy. The above mentioned studies strongly indicate that such a health risk seems to exist. Moreover the risk seems to be high enough so that political measures may be necessary as they were e.g. undertaken in the case of passive smoking.

no dream panorama!

Friday, April 24th, 2009

In a comment to my previous post I was asked wether I “want back GDR”.

here my answer:

I don’t want to have the former GDR back.

But I think the bad deeds of e.g. the STASI are not automatically correlated to every GDR-feature. Like e.g. the GDR had a very good waste-management (sero-system) which was neglected in the west (images) for no good reason.

The former GDR was not – as it claimed with its name – a german democratic state. I visited the GDR rather often (most of my relatives lived in East Berlin) and in fact GDR-authorities were threatening me already as a ten year old for my political opinions (but thats another story).

People who were opposing the official politics were suppressed, where the methods ranged from occupational ban to imprisonment (and sometimes execution – according to Wikipedia there were 164 death penalties made to the order of the STASI).

Although torture was forbidden in the GDR (here an excerpt of the GDR constitution) some methods of the STASI, like sleep deprivation could be called psychological torture. Also the conditions within prisons (here a panorama tourr through the STASI-prison in Berlin-Hohenschoenhausen) could be seen as torture like in particular the socalled water cells which were cells without a window and no furniture and 2 cm water on the floor. As a torture not as immediate life-threatening as waterboarding but still scary and cruel.

US and australian biomechanics

Saturday, March 21st, 2009

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“man floats in tub” artist: anonymous

I just came across these funny videos from the mission of Man System Integration Standards which were mostly shot at skylab. See e.g. this video about how to use paper.

The videos and documents display the problems of finding a well-adapted architecture for space travel. For that the Skylab investigations into anthropometry and biomechanics were apparently necessary.
Similar investigations were also undertaken in Australia. In particular the australian government was recently seeking 2000 volunteers for the ADF Aircrew and Crewstation Anthropometry Project which was organized by the Centre for Applied Anthropometry.

bad bad banks

Wednesday, February 4th, 2009

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A reader called Eve asked:

Hi Nad! You seem to be interested in economy, what do you think about bad banks?

Here my answer.

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diversity

Friday, January 30th, 2009

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“withoutsockpuppets” artwork by artgroup: “Pump up the Wolumen”

In a previous post/comment I suggested that the genetic information about nowadays people and animals may be an important information to store on a long term basis.

In the comment I gave a rough estimation on how much computers would cost to capture DNA sequences, I did not include maintanance etc., i.e. the computation was only intended to give an faint idea about the costs. And of course one could also think about storing e.g. bones or the easy available hair, from which the DNA can be recovered.

The option should be voluntarily, but easily accessible to everyone, so that diversity is maintained. it should contain extra information, like geographical and birth/death-date and so on.

I put the suggestion here in a blog post in case people want to discuss.